I have been into Astronomy since I was about 15. Not so much now as my eyesight isn't what it used to be.... lol
My suggestion when trying to scale size AND distance in a computer simulation.... Don't. There is nothing wrong with a system that is scaled to your desktop resolution and you are using a standard size discs for each object. Just to give you an idea... If you placed a model of the Sun (1 metre diameter) in London, using the same scale, Pluto would be here in Melbourne Australia. Scale the Sun down to 1 cm and you would be lucky to fit Mercury on the same screen... Just to see the relative movement of the planets, small discs, work just fine. This is my opinion. Different colours are a great idea...
I had an old Amstrad CPC464 back in 1985. Max screen resolution of 640x400. I had to display the system in two screens. The inner planets out to Mars and the outer planets. Watching it draw the orbits then the planet was tiresome. Poor machine only had a CPU speed of 4mhz. But the wait was worth it...
I think you have done a great job. Makes me wish I had my scope, and eyesight, back again.... Thank you.